3 files changed, 97 insertions, 122 deletions
diff --git a/pkgs/by-name/ts/tskm/Cargo.lock b/pkgs/by-name/ts/tskm/Cargo.lock
index 92ccbe20..5ec48790 100644
--- a/pkgs/by-name/ts/tskm/Cargo.lock
+++ b/pkgs/by-name/ts/tskm/Cargo.lock
@@ -1,3 +1,5 @@
+# This file is automatically @generated by Cargo.
+# It is not intended for manual editing.
 # nixos-config - My current NixOS configuration
 #
 # Copyright (C) 2025 Benedikt Peetz <benedikt.peetz@b-peetz.de>
@@ -7,9 +9,6 @@
 #
 # You should have received a copy of the License along with this program.
 # If not, see <https://www.gnu.org/licenses/gpl-3.0.txt>.
-
-# This file is automatically @generated by Cargo.
-# It is not intended for manual editing.
 version = 4
 
 [[package]]
@@ -20,9 +19,9 @@ checksum = "512761e0bb2578dd7380c6baaa0f4ce03e84f95e960231d1dec8bf4d7d6e2627"
 
 [[package]]
 name = "ahash"
-version = "0.8.11"
+version = "0.8.12"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "e89da841a80418a9b391ebaea17f5c112ffaaa96f621d2c285b5174da76b9011"
+checksum = "5a15f179cd60c4584b8a8c596927aadc462e27f2ca70c04e0071964a73ba7a75"
 dependencies = [
  "cfg-if",
  "once_cell",
@@ -109,9 +108,9 @@ checksum = "ace50bade8e6234aa140d9a2f552bbee1db4d353f69b8217bc503490fc1a9f26"
 
 [[package]]
 name = "bitflags"
-version = "2.9.0"
+version = "2.9.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "5c8214115b7bf84099f1309324e63141d4c5d7cc26862f97a0a857dbefe165bd"
+checksum = "1b8e56985ec62d17e9c1001dc89c88ecd7dc08e47eba5ec7c29c7b5eeecde967"
 
 [[package]]
 name = "bumpalo"
@@ -127,9 +126,9 @@ checksum = "1fd0f2584146f6f2ef48085050886acf353beff7305ebd1ae69500e27c67f64b"
 
 [[package]]
 name = "cc"
-version = "1.2.20"
+version = "1.2.23"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "04da6a0d40b948dfc4fa8f5bbf402b0fc1a64a28dbf7d12ffd683550f2c1b63a"
+checksum = "5f4ac86a9e5bc1e2b3449ab9d7d3a6a405e3d1bb28d7b9be8614f55846ae3766"
 dependencies = [
  "shlex",
 ]
@@ -142,9 +141,9 @@ checksum = "baf1de4339761588bc0619e3cbc0120ee582ebb74b53b4efbf79117bd2da40fd"
 
 [[package]]
 name = "chrono"
-version = "0.4.40"
+version = "0.4.41"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1a7964611d71df112cb1730f2ee67324fcf4d0fc6606acbbe9bfe06df124637c"
+checksum = "c469d952047f47f91b68d1cba3f10d63c11d73e4636f24f08daf0278abf01c4d"
 dependencies = [
  "android-tzdata",
  "iana-time-zone",
@@ -157,9 +156,9 @@ dependencies = [
 
 [[package]]
 name = "clap"
-version = "4.5.37"
+version = "4.5.38"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "eccb054f56cbd38340b380d4a8e69ef1f02f1af43db2f0cc817a4774d80ae071"
+checksum = "ed93b9805f8ba930df42c2590f05453d5ec36cbb85d018868a5b24d31f6ac000"
 dependencies = [
  "clap_builder",
  "clap_derive",
@@ -167,9 +166,9 @@ dependencies = [
 
 [[package]]
 name = "clap_builder"
-version = "4.5.37"
+version = "4.5.38"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "efd9466fac8543255d3b1fcad4762c5e116ffe808c8a3043d4263cd4fd4862a2"
+checksum = "379026ff283facf611b0ea629334361c4211d1b12ee01024eec1591133b04120"
 dependencies = [
  "anstream",
  "anstyle",
@@ -179,9 +178,9 @@ dependencies = [
 
 [[package]]
 name = "clap_complete"
-version = "4.5.47"
+version = "4.5.50"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "c06f5378ea264ad4f82bbc826628b5aad714a75abf6ece087e923010eb937fb6"
+checksum = "c91d3baa3bcd889d60e6ef28874126a0b384fd225ab83aa6d8a801c519194ce1"
 dependencies = [
  "clap",
  "clap_lex",
@@ -304,9 +303,9 @@ dependencies = [
 
 [[package]]
 name = "getrandom"
-version = "0.3.2"
+version = "0.3.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "73fea8450eea4bac3940448fb7ae50d91f034f941199fcd9d909a5a07aa455f0"
+checksum = "26145e563e54f2cadc477553f1ec5ee650b00862f0a58bcd12cbdc5f0ea2d2f4"
 dependencies = [
  "cfg-if",
  "libc",
@@ -340,9 +339,9 @@ checksum = "2304e00983f87ffb38b55b444b5e3b60a884b5d30c0fca7d82fe33449bbe55ea"
 
 [[package]]
 name = "hermit-abi"
-version = "0.5.0"
+version = "0.5.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "fbd780fe5cc30f81464441920d82ac8740e2e46b29a6fad543ddd075229ce37e"
+checksum = "f154ce46856750ed433c8649605bf7ed2de3bc35fd9d2a9f30cddd873c80cb08"
 
 [[package]]
 name = "iana-time-zone"
@@ -370,21 +369,22 @@ dependencies = [
 
 [[package]]
 name = "icu_collections"
-version = "1.5.0"
+version = "2.0.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "db2fa452206ebee18c4b5c2274dbf1de17008e874b4dc4f0aea9d01ca79e4526"
+checksum = "200072f5d0e3614556f94a9930d5dc3e0662a652823904c3a75dc3b0af7fee47"
 dependencies = [
  "displaydoc",
+ "potential_utf",
  "yoke",
  "zerofrom",
  "zerovec",
 ]
 
 [[package]]
-name = "icu_locid"
-version = "1.5.0"
+name = "icu_locale_core"
+version = "2.0.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "13acbb8371917fc971be86fc8057c41a64b521c184808a698c02acc242dbf637"
+checksum = "0cde2700ccaed3872079a65fb1a78f6c0a36c91570f28755dda67bc8f7d9f00a"
 dependencies = [
  "displaydoc",
  "litemap",
@@ -394,30 +394,10 @@ dependencies = [
 ]
 
 [[package]]
-name = "icu_locid_transform"
-version = "1.5.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "01d11ac35de8e40fdeda00d9e1e9d92525f3f9d887cdd7aa81d727596788b54e"
-dependencies = [
- "displaydoc",
- "icu_locid",
- "icu_locid_transform_data",
- "icu_provider",
- "tinystr",
- "zerovec",
-]
-
-[[package]]
-name = "icu_locid_transform_data"
-version = "1.5.1"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "7515e6d781098bf9f7205ab3fc7e9709d34554ae0b21ddbcb5febfa4bc7df11d"
-
-[[package]]
 name = "icu_normalizer"
-version = "1.5.0"
+version = "2.0.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "19ce3e0da2ec68599d193c93d088142efd7f9c5d6fc9b803774855747dc6a84f"
+checksum = "436880e8e18df4d7bbc06d58432329d6458cc84531f7ac5f024e93deadb37979"
 dependencies = [
  "displaydoc",
  "icu_collections",
@@ -425,68 +405,55 @@ dependencies = [
  "icu_properties",
  "icu_provider",
  "smallvec",
- "utf16_iter",
- "utf8_iter",
- "write16",
  "zerovec",
 ]
 
 [[package]]
 name = "icu_normalizer_data"
-version = "1.5.1"
+version = "2.0.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "c5e8338228bdc8ab83303f16b797e177953730f601a96c25d10cb3ab0daa0cb7"
+checksum = "00210d6893afc98edb752b664b8890f0ef174c8adbb8d0be9710fa66fbbf72d3"
 
 [[package]]
 name = "icu_properties"
-version = "1.5.1"
+version = "2.0.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "93d6020766cfc6302c15dbbc9c8778c37e62c14427cb7f6e601d849e092aeef5"
+checksum = "2549ca8c7241c82f59c80ba2a6f415d931c5b58d24fb8412caa1a1f02c49139a"
 dependencies = [
  "displaydoc",
  "icu_collections",
- "icu_locid_transform",
+ "icu_locale_core",
  "icu_properties_data",
  "icu_provider",
- "tinystr",
+ "potential_utf",
+ "zerotrie",
  "zerovec",
 ]
 
 [[package]]
 name = "icu_properties_data"
-version = "1.5.1"
+version = "2.0.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "85fb8799753b75aee8d2a21d7c14d9f38921b54b3dbda10f5a3c7a7b82dba5e2"
+checksum = "8197e866e47b68f8f7d95249e172903bec06004b18b2937f1095d40a0c57de04"
 
 [[package]]
 name = "icu_provider"
-version = "1.5.0"
+version = "2.0.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "6ed421c8a8ef78d3e2dbc98a973be2f3770cb42b606e3ab18d6237c4dfde68d9"
+checksum = "03c80da27b5f4187909049ee2d72f276f0d9f99a42c306bd0131ecfe04d8e5af"
 dependencies = [
  "displaydoc",
- "icu_locid",
- "icu_provider_macros",
+ "icu_locale_core",
  "stable_deref_trait",
  "tinystr",
  "writeable",
  "yoke",
  "zerofrom",
+ "zerotrie",
  "zerovec",
 ]
 
 [[package]]
-name = "icu_provider_macros"
-version = "1.5.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1ec89e9337638ecdc08744df490b221a7399bf8d164eb52a665454e60e075ad6"
-dependencies = [
- "proc-macro2",
- "quote",
- "syn",
-]
-
-[[package]]
 name = "idna"
 version = "1.0.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
@@ -499,9 +466,9 @@ dependencies = [
 
 [[package]]
 name = "idna_adapter"
-version = "1.2.0"
+version = "1.2.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "daca1df1c957320b2cf139ac61e7bd64fed304c5040df000a745aa1de3b4ef71"
+checksum = "3acae9609540aa318d1bc588455225fb2085b9ed0c4f6bd0d9d5bcd86f1a0344"
 dependencies = [
  "icu_normalizer",
  "icu_properties",
@@ -577,9 +544,9 @@ dependencies = [
 
 [[package]]
 name = "litemap"
-version = "0.7.5"
+version = "0.8.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "23fb14cb19457329c82206317a5663005a4d404783dc74f4252769b0d5f42856"
+checksum = "241eaef5fd12c88705a01fc1066c48c4b36e0dd4377dcdc7ec3942cea7a69956"
 
 [[package]]
 name = "log"
@@ -645,6 +612,15 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "7edddbd0b52d732b21ad9a5fab5c704c14cd949e5e9a1ec5929a24fded1b904c"
 
 [[package]]
+name = "potential_utf"
+version = "0.1.2"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "e5a7c30837279ca13e7c867e9e40053bc68740f988cb07f7ca6df43cc734b585"
+dependencies = [
+ "zerovec",
+]
+
+[[package]]
 name = "proc-macro2"
 version = "1.0.95"
 source = "registry+https://github.com/rust-lang/crates.io-index"
@@ -810,9 +786,9 @@ dependencies = [
 
 [[package]]
 name = "syn"
-version = "2.0.100"
+version = "2.0.101"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "b09a44accad81e1ba1cd74a32461ba89dee89095ba17b32f5d03683b1b1fc2a0"
+checksum = "8ce2b7fc941b3a24138a0a7cf8e858bfc6a992e7978a068a5c760deb0ed43caf"
 dependencies = [
  "proc-macro2",
  "quote",
@@ -821,9 +797,9 @@ dependencies = [
 
 [[package]]
 name = "synstructure"
-version = "0.13.1"
+version = "0.13.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "c8af7666ab7b6390ab78131fb5b0fce11d6b7a6951602017c35fa82800708971"
+checksum = "728a70f3dbaf5bab7f0c4b1ac8d7ae5ea60a4b5549c8a5914361c99147a709d2"
 dependencies = [
  "proc-macro2",
  "quote",
@@ -891,9 +867,9 @@ dependencies = [
 
 [[package]]
 name = "tinystr"
-version = "0.7.6"
+version = "0.8.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "9117f5d4db391c1cf6927e7bea3db74b9a1c1add8f7eda9ffd5364f40f57b82f"
+checksum = "5d4f6d1145dcb577acf783d4e601bc1d76a13337bb54e6233add580b07344c8b"
 dependencies = [
  "displaydoc",
  "zerovec",
@@ -946,12 +922,6 @@ dependencies = [
 ]
 
 [[package]]
-name = "utf16_iter"
-version = "1.0.5"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "c8232dd3cdaed5356e0f716d285e4b40b932ac434100fe9b7e0e8e935b9e6246"
-
-[[package]]
 name = "utf8_iter"
 version = "1.0.4"
 source = "registry+https://github.com/rust-lang/crates.io-index"
@@ -969,7 +939,7 @@ version = "1.16.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "458f7a779bf54acc9f347480ac654f68407d3aab21269a6e3c9f922acd9e2da9"
 dependencies = [
- "getrandom 0.3.2",
+ "getrandom 0.3.3",
  "serde",
 ]
 
@@ -1101,9 +1071,9 @@ checksum = "712e227841d057c1ee1cd2fb22fa7e5a5461ae8e48fa2ca79ec42cfc1931183f"
 
 [[package]]
 name = "windows-core"
-version = "0.61.0"
+version = "0.61.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "4763c1de310c86d75a878046489e2e5ba02c649d185f21c67d4cf8a56d098980"
+checksum = "46ec44dc15085cea82cf9c78f85a9114c463a369786585ad2882d1ff0b0acf40"
 dependencies = [
  "windows-implement",
  "windows-interface",
@@ -1142,18 +1112,18 @@ checksum = "76840935b766e1b0a05c0066835fb9ec80071d4c09a16f6bd5f7e655e3c14c38"
 
 [[package]]
 name = "windows-result"
-version = "0.3.2"
+version = "0.3.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "c64fd11a4fd95df68efcfee5f44a294fe71b8bc6a91993e2791938abcc712252"
+checksum = "4b895b5356fc36103d0f64dd1e94dfa7ac5633f1c9dd6e80fe9ec4adef69e09d"
 dependencies = [
  "windows-link",
 ]
 
 [[package]]
 name = "windows-strings"
-version = "0.4.0"
+version = "0.4.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "7a2ba9642430ee452d5a7aa78d72907ebe8cfda358e8cb7918a2050581322f97"
+checksum = "2a7ab927b2637c19b3dbe0965e75d8f2d30bdd697a1516191cad2ec4df8fb28a"
 dependencies = [
  "windows-link",
 ]
@@ -1241,22 +1211,16 @@ dependencies = [
 ]
 
 [[package]]
-name = "write16"
-version = "1.0.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "d1890f4022759daae28ed4fe62859b1236caebfc61ede2f63ed4e695f3f6d936"
-
-[[package]]
 name = "writeable"
-version = "0.5.5"
+version = "0.6.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1e9df38ee2d2c3c5948ea468a8406ff0db0b29ae1ffde1bcf20ef305bcc95c51"
+checksum = "ea2f10b9bb0928dfb1b42b65e1f9e36f7f54dbdf08457afefb38afcdec4fa2bb"
 
 [[package]]
 name = "yoke"
-version = "0.7.5"
+version = "0.8.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "120e6aef9aa629e3d4f52dc8cc43a015c7724194c97dfaf45180d2daf2b77f40"
+checksum = "5f41bb01b8226ef4bfd589436a297c53d118f65921786300e427be8d487695cc"
 dependencies = [
  "serde",
  "stable_deref_trait",
@@ -1266,9 +1230,9 @@ dependencies = [
 
 [[package]]
 name = "yoke-derive"
-version = "0.7.5"
+version = "0.8.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "2380878cad4ac9aac1e2435f3eb4020e8374b5f13c296cb75b4620ff8e229154"
+checksum = "38da3c9736e16c5d3c8c597a9aaa5d1fa565d0532ae05e27c24aa62fb32c0ab6"
 dependencies = [
  "proc-macro2",
  "quote",
@@ -1278,18 +1242,18 @@ dependencies = [
 
 [[package]]
 name = "zerocopy"
-version = "0.7.35"
+version = "0.8.25"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1b9b4fd18abc82b8136838da5d50bae7bdea537c574d8dc1a34ed098d6c166f0"
+checksum = "a1702d9583232ddb9174e01bb7c15a2ab8fb1bc6f227aa1233858c351a3ba0cb"
 dependencies = [
  "zerocopy-derive",
 ]
 
 [[package]]
 name = "zerocopy-derive"
-version = "0.7.35"
+version = "0.8.25"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "fa4f8080344d4671fb4e831a13ad1e68092748387dfc4f55e356242fae12ce3e"
+checksum = "28a6e20d751156648aa063f3800b706ee209a32c0b4d9f24be3d980b01be55ef"
 dependencies = [
  "proc-macro2",
  "quote",
@@ -1318,10 +1282,21 @@ dependencies = [
 ]
 
 [[package]]
+name = "zerotrie"
+version = "0.2.2"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "36f0bbd478583f79edad978b407914f61b2972f5af6fa089686016be8f9af595"
+dependencies = [
+ "displaydoc",
+ "yoke",
+ "zerofrom",
+]
+
+[[package]]
 name = "zerovec"
-version = "0.10.4"
+version = "0.11.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "aa2b893d79df23bfb12d5461018d408ea19dfafe76c2c7ef6d4eba614f8ff079"
+checksum = "4a05eb080e015ba39cc9e23bbe5e7fb04d5fb040350f99f34e338d5fdd294428"
 dependencies = [
  "yoke",
  "zerofrom",
@@ -1330,9 +1305,9 @@ dependencies = [
 
 [[package]]
 name = "zerovec-derive"
-version = "0.10.3"
+version = "0.11.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "6eafa6dfb17584ea3e2bd6e76e0cc15ad7af12b09abdd1ca55961bed9b1063c6"
+checksum = "5b96237efa0c878c64bd89c436f661be4e46b2f3eff1ebb976f7ef2321d2f58f"
 dependencies = [
  "proc-macro2",
  "quote",
diff --git a/pkgs/by-name/ts/tskm/Cargo.toml b/pkgs/by-name/ts/tskm/Cargo.toml
index d9d69b53..c8b1832d 100644
--- a/pkgs/by-name/ts/tskm/Cargo.toml
+++ b/pkgs/by-name/ts/tskm/Cargo.toml
@@ -17,8 +17,8 @@ edition = "2021"
 
 [dependencies]
 anyhow = "1.0.98"
-clap = { version = "4.5.37", features = ["derive"] }
-clap_complete = { version = "4.5.47", features = ["unstable-dynamic"] }
+clap = { version = "4.5.38", features = ["derive"] }
+clap_complete = { version = "4.5.50", features = ["unstable-dynamic"] }
 dirs = "6.0.0"
 log = "0.4.27"
 lz4_flex = "0.11.3"
diff --git a/pkgs/by-name/ts/tskm/flake.lock b/pkgs/by-name/ts/tskm/flake.lock
index 07eb6b21..d9641458 100644
--- a/pkgs/by-name/ts/tskm/flake.lock
+++ b/pkgs/by-name/ts/tskm/flake.lock
@@ -2,11 +2,11 @@
   "nodes": {
     "nixpkgs": {
       "locked": {
-        "lastModified": 1745377448,
-        "narHash": "sha256-jhZDfXVKdD7TSEGgzFJQvEEZ2K65UMiqW5YJ2aIqxMA=",
+        "lastModified": 1747312588,
+        "narHash": "sha256-MmJvj6mlWzeRwKGLcwmZpKaOPZ5nJb/6al5CXqJsgjo=",
         "owner": "NixOS",
         "repo": "nixpkgs",
-        "rev": "507b63021ada5fee621b6ca371c4fca9ca46f52c",
+        "rev": "b1bebd0fe266bbd1820019612ead889e96a8fa2d",
         "type": "github"
       },
       "original": {